<< Explore cell typing with AI: take a sneak peek at Cellarium Cell Annotation Service More info

September 18, 2024

What would you do with a richer, less manual way to annotate cell types? 

Single Cell Portal sent a dataset to Cellarium Cell Annotation Service (CAS) to see what would come out of such a tool. Let us know what you would do in our CAS survey!

Here are the vanilla clustering results 10x Genomics supplied with this small PBMC dataset:

Cellarium CAS generates the most granular cell type annotations that meet a given probability threshold. Pictured here are cell type annotations from CAS where the annotation probability is at least 65% (Annotation: high_conf_CAS_set_1_cell_type) 

Corresponding confidence scores for each annotation visualized with the high_conf_CAS_set_1_probability annotation.