Study: AMP Phase 1 12122 cells
This study provides access to view three datasets from the Accelerating Medicines Partnership (AMP) Phase I project
Dataset 1: Rheumatoid Arthritis
To learn more about this project, please refer to our preprint paper available at bioRxiv: Defining Inflammatory Cell States in Rheumatoid Arthritis Joint Synovial Tissues by Integrating Single-cell Transcriptomics and Mass Cytometry
On this site, we provide an interactive view of the single-cell RNA-seq. To access the full data, please go to ImmPort with the study accession code of SDY998 and SDY999. The source code repository of the computational pipeline for data analysis and integration is located at amp_phase1_ra.
Dataset 2: Lupus Nephritis (Broad Institute)
To learn more about this project, please refer to our preprint paper available at bioRxiv: The Immune Cell Landscape in Kidneys of Lupus Nephritis Patients
Dataset 3: Lupus Nephritis (NYU Langone - Metro)
To learn more about this project, please refer to our preprint paper available at bioRxiv: Insights from Comparison of the Renal and Skin Single Cell Transcriptomes in Lupus Nephritis
Please contact us if you have any questions, requests, or comments on the analysis and results.